The lat/lon for each access point is where your GPS device was (and likely you too

) when the strongest signal was received. The only way to know where an AP really is is to walk around until the signal is the strongest and taking note of the lat/lon for the AP.
To get the locations of the APs, you could start logging to a GPX file, then walk around the area where the APs are, and later convert the GPX log to a summary KML file. This KML file will have the places the APs were the strongest. You can open the file in Google Earth, which should allow you to get the distance between the APs and another point.
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